PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00021916-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 276aa    MW: 31136.5 Da    PI: 8.6163
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00021916-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.8e-184695255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  WALNUT_00021916-RA 46 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDQAACLLRG 95
                        799******.7*********32...35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.7E-3546109IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-1946103IPR016177DNA-binding domain
PROSITE profilePS5103219.57246103IPR001471AP2/ERF domain
PfamPF008475.9E-134695IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-2846103IPR001471AP2/ERF domain
CDDcd000184.87E-3146102No hitNo description
PRINTSPR003679.4E-84758IPR001471AP2/ERF domain
PRINTSPR003679.4E-86985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEIQFHQHKQ HKNSDISGIS KESKFKGRGR SRSRSRSRSS SSNTNKFVGV RQRPSGRWVA  60
EIKDTTQKIR MWLGTFETAE EAARAYDQAA CLLRGSNTRT NFITHVFSDS PLASRIRNLL  120
NNKKGANREQ QVESPTPTIS TTSTRPSSRT SSNSTSPSNG DNSDLSRGNT QFFVDAYKPD  180
LSNCSEEFPF QQYPASWGFG PGYDRFLFTQ EAVDLPKNAA LHDTAELEIP EFERMKVERQ  240
ISASLYAVNG VHEYMETVHD PPEALWDLPP LCSLFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A6e-1347108668ATERF1
2gcc_A6e-1347108668ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12737RGRSRSRSRSR
22937RSRSRSRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4662831e-57AM466283.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X245563.19, clone ENTAV 115.
GenBankFQ3965861e-57FQ396586.1 Vitis vinifera clone SS0AEB9YH10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015899372.11e-115PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A067L5C61e-114A0A067L5C6_JATCU; Uncharacterized protein
STRINGVIT_08s0007g07250.t011e-112(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-40related to AP2 11